STDP-with-neuromodulation implementation. More...

#include "post_events_with_da.h"
#include "synapse_dynamics_stdp_common.h"
#include "stdp_typedefs.h"

Data Structures
struct	neuromodulation_data_t

struct	neuromodulated_synapse_t

struct	nm_update_state_t

struct	nm_final_state_t

struct	synapse_row_plastic_data_t
	The format of the plastic data region of a synaptic row. More...

struct	nm_params_t

union	synapse_row_plastic_data_t.__unnamed10__

struct	synapse_row_plastic_data_t.__unnamed10__.__unnamed12__

Macros
#define	DECAY_LOOKUP_TAU_C(time) maths_lut_exponential_decay(time, tau_c_lookup)

#define	DECAY_LOOKUP_TAU_D(time) maths_lut_exponential_decay(time, tau_d_lookup)

Functions
static nm_update_state_t	get_nm_update_state (neuromodulated_synapse_t synapse, index_t synapse_type)

static nm_final_state_t	get_nm_final_state (nm_update_state_t update_state)

static neuromodulated_synapse_t	get_nm_final_synaptic_word (nm_final_state_t final_state)

static post_event_window_t	get_post_event_window (const post_event_history_t *post_event_history, const uint32_t delayed_pre_time, const uint32_t delayed_last_pre_time, const uint32_t delay_dendritic)

static accum	get_weight_update (int16_t decay_eligibility_trace, int16_t decay_dopamine_trace, int16_t last_dopamine_trace, accum eligibility_weight)

static nm_final_state_t	izhikevich_neuromodulation_plasticity_update_synapse (const uint32_t time, const uint32_t last_pre_time, const pre_trace_t last_pre_trace, const pre_trace_t new_pre_trace, const uint32_t delay_dendritic, const uint32_t delay_axonal, nm_update_state_t current_state, const post_event_history_t *post_event_history)
	Synapse update loop core.

bool	synapse_dynamics_initialise (address_t address, uint32_t n_neurons, uint32_t n_synapse_types, uint32_t *ring_buffer_to_input_buffer_left_shifts)
	Initialise the synapse dynamics.

void	synapse_dynamics_print_plastic_synapses (synapse_row_plastic_data_t plastic_region_data, synapse_row_fixed_part_t fixed_region, uint32_t *ring_buffer_to_input_buffer_left_shifts)
	Print the synapse dynamics.

static index_t	sparse_axonal_delay (uint32_t x)
	Get the axonal delay.

void	synapse_dynamics_process_post_synaptic_event (uint32_t time, index_t neuron_index)
	Inform the synapses that the neuron fired.

static neuromodulated_synapse_t	process_plastic_synapse (uint32_t control_word, uint32_t last_pre_time, pre_trace_t last_pre_trace, pre_trace_t new_pre_trace, weight_t *ring_buffers, uint32_t time, uint32_t colour_delay, neuromodulated_synapse_t synapse)

static void	process_neuromodulation (synapse_row_plastic_data_t plastic_region_address, synapse_row_fixed_part_t fixed_region, uint32_t time)

bool	synapse_dynamics_process_plastic_synapses (synapse_row_plastic_data_t plastic_region_address, synapse_row_fixed_part_t fixed_region, weight_t ring_buffers, uint32_t time, uint32_t colour_delay, bool write_back)
	Process the dynamics of the synapses.

static neuromodulated_synapse_t *	get_plastic_synapses (synaptic_row_t row)

bool	synapse_dynamics_find_neuron (uint32_t id, synaptic_row_t row, weight_t weight, uint16_t delay, uint32_t offset, uint32_t synapse_type)
	Search the synaptic row for the the connection with the specified post-synaptic ID.

bool	synapse_dynamics_remove_neuron (uint32_t offset, synaptic_row_t row)
	Remove the entry at the specified offset in the synaptic row.

bool	synapse_dynamics_add_neuron (uint32_t id, synaptic_row_t row, weight_t weight, uint32_t delay, uint32_t type)
	Add an entry in the synaptic row.

Variables
static nm_params_t	nm_params

static int16_lut *	tau_c_lookup

static int16_lut *	tau_d_lookup

static uint32_t *	nm_weight_shift

uint32_t	skipped_synapses

Detailed Description

STDP-with-neuromodulation implementation.

Definition in file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

Data Structure Documentation

◆ neuromodulation_data_t

struct neuromodulation_data_t

Definition at line 23 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

Data Fields
uint32_t	synapse_type:30
uint32_t	is_reward:1
uint32_t	is_neuromodulation: 1

◆ neuromodulated_synapse_t

struct neuromodulated_synapse_t

Definition at line 29 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

Data Fields
weight_t	weight
plastic_synapse_t	eligibility_synapse

◆ nm_update_state_t

struct nm_update_state_t

Definition at line 34 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

Data Fields
accum	weight
uint32_t	weight_shift
update_state_t	eligibility_state

◆ nm_final_state_t

struct nm_final_state_t

Definition at line 40 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

Data Fields
weight_t	weight
final_state_t	final_state

◆ synapse_row_plastic_data_t

struct synapse_row_plastic_data_t

The format of the plastic data region of a synaptic row.

Definition at line 45 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

Data Fields
union synapse_row_plastic_data_t.__unnamed10__	__unnamed__
pre_event_history_t	history	The pre-event history.
plastic_synapse_t	synapses[]	The per-synapse information.

◆ nm_params_t

struct nm_params_t

Definition at line 58 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

Data Fields
accum	weight_update_constant_component	Constant part of weight update.
accum	max_weight	Maximum of weight after update.
accum	min_weight	Minimum of weight after update (must be >= 0)

◆ synapse_row_plastic_data_t.unnamed10

union synapse_row_plastic_data_t.__unnamed10__

Definition at line 46 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

Data Fields
struct synapse_row_plastic_data_t.__unnamed10__.__unnamed12__	__unnamed__
neuromodulation_data_t	neuromodulation	Neuromodulation data.

◆ synapse_row_plastic_data_t.unnamed10.unnamed12

struct synapse_row_plastic_data_t.__unnamed10__.__unnamed12__

Definition at line 47 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

Data Fields
pre_event_history_t	history	The pre-event history.
neuromodulated_synapse_t	synapses[]	The per-synapse information.

Macro Definition Documentation

◆ DECAY_LOOKUP_TAU_C

#define DECAY_LOOKUP_TAU_C ( time ) maths_lut_exponential_decay(time, tau_c_lookup)

Definition at line 81 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ DECAY_LOOKUP_TAU_D

#define DECAY_LOOKUP_TAU_D ( time ) maths_lut_exponential_decay(time, tau_d_lookup)

Definition at line 83 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

Function Documentation

◆ get_nm_update_state()

static nm_update_state_t get_nm_update_state	(	neuromodulated_synapse_t	synapse,
		index_t	synapse_type
	)

inlinestatic

Definition at line 86 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ get_nm_final_state()

static nm_final_state_t get_nm_final_state ( nm_update_state_t update_state )

inlinestatic

Definition at line 98 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ get_nm_final_synaptic_word()

static neuromodulated_synapse_t get_nm_final_synaptic_word ( nm_final_state_t final_state )

inlinestatic

Definition at line 112 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ get_post_event_window()

static post_event_window_t get_post_event_window	(	const post_event_history_t *	post_event_history,
		const uint32_t	delayed_pre_time,
		const uint32_t	delayed_last_pre_time,
		const uint32_t	delay_dendritic
	)

inlinestatic

Definition at line 122 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ get_weight_update()

static accum get_weight_update	(	int16_t	decay_eligibility_trace,
		int16_t	decay_dopamine_trace,
		int16_t	last_dopamine_trace,
		accum	eligibility_weight
	)

inlinestatic

Definition at line 148 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ izhikevich_neuromodulation_plasticity_update_synapse()

static nm_final_state_t izhikevich_neuromodulation_plasticity_update_synapse	(	const uint32_t	time,
		const uint32_t	last_pre_time,
		const pre_trace_t	last_pre_trace,
		const pre_trace_t	new_pre_trace,
		const uint32_t	delay_dendritic,
		const uint32_t	delay_axonal,
		nm_update_state_t	current_state,
		const post_event_history_t *	post_event_history
	)

inlinestatic

Synapse update loop core.

Parameters

[in]	time	The current time
[in]	last_pre_time	The time of the last previous pre-event
[in]	last_pre_trace	The last previous pre-trace
[in]	new_pre_trace	The new pre-trace
[in]	delay_dendritic	The dendritic delay for the synapse
[in]	delay_axonal	The axonal delay for the synapse
[in]	current_state	The current state
[in]	post_event_history	The history

Returns: The new basic state of the synapse

Definition at line 177 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ synapse_dynamics_initialise()

bool synapse_dynamics_initialise	(	address_t	address,
		uint32_t	n_neurons,
		uint32_t	n_synapse_types,
		uint32_t *	ring_buffer_to_input_buffer_left_shifts
	)

Initialise the synapse dynamics.

Parameters

[in]	address	Where the configuration data is
[in]	n_neurons	Number of neurons
[in]	n_synapse_types	Number of synapse types
[in]	ring_buffer_to_input_buffer_left_shifts	How to interpret the values from the ring buffers

Returns: Whether the initialisation succeeded.

Definition at line 276 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ synapse_dynamics_print_plastic_synapses()

void synapse_dynamics_print_plastic_synapses	(	synapse_row_plastic_data_t *	plastic_region_data,
		synapse_row_fixed_part_t *	fixed_region,
		uint32_t *	ring_buffer_to_input_buffer_left_shifts
	)

Print the synapse dynamics.

Parameters

[in]	plastic_region_data	Where the plastic data is
[in]	fixed_region	Where the fixed data is
[in]	ring_buffer_to_input_buffer_left_shifts	How to interpret the values from the ring buffers

Definition at line 315 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ sparse_axonal_delay()

static index_t sparse_axonal_delay ( uint32_t x )

inlinestatic

Get the axonal delay.

Parameters

[in] x The packed plastic synapse control word

Returns: the axonal delay

Definition at line 361 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ synapse_dynamics_process_post_synaptic_event()

void synapse_dynamics_process_post_synaptic_event	(	uint32_t	time,
		index_t	neuron_index
	)

Inform the synapses that the neuron fired.

Parameters

[in]	time	The current simulation time
[in]	neuron_index	Which neuron are we processing

Definition at line 372 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ process_plastic_synapse()

static neuromodulated_synapse_t process_plastic_synapse	(	uint32_t	control_word,
		uint32_t	last_pre_time,
		pre_trace_t	last_pre_trace,
		pre_trace_t	new_pre_trace,
		weight_t *	ring_buffers,
		uint32_t	time,
		uint32_t	colour_delay,
		neuromodulated_synapse_t	synapse
	)

inlinestatic

Definition at line 391 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ process_neuromodulation()

static void process_neuromodulation	(	synapse_row_plastic_data_t *	plastic_region_address,
		synapse_row_fixed_part_t *	fixed_region,
		uint32_t	time
	)

inlinestatic

Definition at line 423 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ synapse_dynamics_process_plastic_synapses()

bool synapse_dynamics_process_plastic_synapses	(	synapse_row_plastic_data_t *	plastic_region_data,
		synapse_row_fixed_part_t *	fixed_region,
		weight_t *	ring_buffers,
		uint32_t	time,
		uint32_t	colour_delay,
		bool *	write_back
	)

Process the dynamics of the synapses.

Parameters

[in,out]	plastic_region_data	Where the plastic data is
[in]	fixed_region	Where the fixed data is
[in,out]	ring_buffers	The ring buffers
[in]	time	The current simulation time
[out]	Whether	to write back anything

Returns: Whether the processing was successful or not

Definition at line 460 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ get_plastic_synapses()

static neuromodulated_synapse_t * get_plastic_synapses ( synaptic_row_t row )

inlinestatic

Definition at line 506 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ synapse_dynamics_find_neuron()

bool synapse_dynamics_find_neuron	(	uint32_t	id,
		synaptic_row_t	row,
		weight_t *	weight,
		uint16_t *	delay,
		uint32_t *	offset,
		uint32_t *	synapse_type
	)

Search the synaptic row for the the connection with the specified post-synaptic ID.

Parameters

[in]	id	the (core-local) ID of the neuron to search for in the synaptic row
[in]	row	the core-local address of the synaptic row
[out]	weight	address to contain the weight of the connection
[out]	delay	address to contain the delay of the connection
[out]	offset	address to contain the offset of the connection
[out]	synapse_type	the synapse type of the connection

Returns: was the search successful?

Definition at line 512 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ synapse_dynamics_remove_neuron()

bool synapse_dynamics_remove_neuron	(	uint32_t	offset,
		synaptic_row_t	row
	)

Remove the entry at the specified offset in the synaptic row.

Parameters

[in]	offset	the offset in the row at which to remove the entry
[in]	row	the core-local address of the synaptic row

Returns: was the removal successful?

Definition at line 542 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ synapse_dynamics_add_neuron()

bool synapse_dynamics_add_neuron	(	uint32_t	id,
		synaptic_row_t	row,
		weight_t	weight,
		uint32_t	delay,
		uint32_t	type
	)

Add an entry in the synaptic row.

Parameters

[in]	id	the (core-local) ID of the post-synaptic neuron to be added
[in]	row	the core-local address of the synaptic row
[in]	weight	the initial weight associated with the connection
[in]	delay	the delay associated with the connection
[in]	type	the type of the connection (e.g. inhibitory)

Returns: was the addition successful?

Definition at line 560 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

Variable Documentation

◆ nm_params

nm_params_t nm_params

static

Definition at line 71 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ tau_c_lookup

int16_lut* tau_c_lookup

static

Definition at line 73 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ tau_d_lookup

int16_lut* tau_d_lookup

static

Definition at line 75 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ nm_weight_shift

uint32_t* nm_weight_shift

static

Definition at line 77 of file synapse_dynamics_stdp_izhikevich_neuromodulation.c.

◆ skipped_synapses

uint32_t skipped_synapses

extern

Count of the synapses that have been skipped because the delay wasn't big enough given how long the spike took to arrive

Definition at line 84 of file synapses.c.

Data Structures

Macros

Functions

Variables

Detailed Description

Data Structure Documentation

◆ neuromodulation_data_t

◆ neuromodulated_synapse_t

◆ nm_update_state_t

◆ nm_final_state_t

◆ synapse_row_plastic_data_t

◆ nm_params_t

◆ synapse_row_plastic_data_t.__unnamed10__

◆ synapse_row_plastic_data_t.__unnamed10__.__unnamed12__

Macro Definition Documentation

◆ DECAY_LOOKUP_TAU_C

◆ DECAY_LOOKUP_TAU_D

Function Documentation

◆ get_nm_update_state()

◆ get_nm_final_state()

◆ get_nm_final_synaptic_word()

◆ get_post_event_window()

◆ get_weight_update()

◆ izhikevich_neuromodulation_plasticity_update_synapse()

◆ synapse_dynamics_initialise()

◆ synapse_dynamics_print_plastic_synapses()

◆ sparse_axonal_delay()

◆ synapse_dynamics_process_post_synaptic_event()

◆ process_plastic_synapse()

◆ process_neuromodulation()

◆ synapse_dynamics_process_plastic_synapses()

◆ get_plastic_synapses()

◆ synapse_dynamics_find_neuron()

◆ synapse_dynamics_remove_neuron()

◆ synapse_dynamics_add_neuron()

Variable Documentation

◆ nm_params

◆ tau_c_lookup

◆ tau_d_lookup

◆ nm_weight_shift

◆ skipped_synapses

◆ synapse_row_plastic_data_t.unnamed10

◆ synapse_row_plastic_data_t.unnamed10.unnamed12